PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15612.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 200aa    MW: 22927.1 Da    PI: 7.0105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15612.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1768118256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g+
  PK15612.1  68 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFYLRGA 118
                59*****99.**********9...336*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-3468131IPR001471AP2/ERF domain
PROSITE profilePS5103222.0168125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3068126IPR001471AP2/ERF domain
PRINTSPR003671.0E-116980IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2069126IPR016177DNA-binding domain
PfamPF008471.2E-1069117IPR001471AP2/ERF domain
CDDcd000181.90E-2669127No hitNo description
PRINTSPR003671.0E-11107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEGDECCSSN SIISTTTTTK RKYVIKRQEE EEDSHNNNHQ HHRHHHHQHH LLDQHNETAS  60
DDDQKSRPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYTT PIAAARAYDT AVFYLRGASA  120
RLNFPDLILQ EDLHLADMSA ASIRKRATEI GAKVDASQQK TAQADNPSLI TSSPSNNNNK  180
SFKADLNQYP DPDDSDEQDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1569125360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094641.12e-63ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC302e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2P5F8W67e-63A0A2P5F8W6_TREOI; AP2/ERF domain containing protein
STRINGXP_010094641.18e-63(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.17e-51related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]