PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14631.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 387aa    MW: 42859.1 Da    PI: 7.4258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14631.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08140160526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G+Ck Gd+C FaHg
  PK14631.1 140 ACPDFRK-GHCKKGDSCEFAHG 160
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.7E-6135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089136162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5139162IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6140160IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.981170194IPR000571Zinc finger, CCCH-type
SMARTSM0035610170193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMLGETHRPN PTIHVPPWDL TVDDPMAEMY SPFPLSGVSI NSDCNGGDYS PYYLHEALSA  60
LSPYLPSVND LDADSDSDVS GRESDAPVDA YSCDQFRMFE FKVRRCARGR SHDWTECPYA  120
HPGEKARRRD PRKYHYSGTA CPDFRKGHCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT  180
NCRRRVCFFA HTPDQLRVLP QQSPKGSNAA ESYDGSPLRQ AIEASCVKTL PFLSPPASIS  240
PPATPQADSP PMSPMAHVLS RSLGSSSINE MVASLRDLRL GKVKSLPSSW TNNQKGSPGF  300
GSPRGSILRP GFCSLPTTPT RAPTRPSYLD FCDLEEEPAM ERVESGRDIR AKMFEKLSKE  360
NSLKRVDPNP NSSVGTPDVG WVSELVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086901.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821991e-140C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A2P5FS110.0A0A2P5FS11_TREOI; Zinc finger, CCCH-type
STRINGXP_010086901.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-134C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]