PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | WRKY | ||||||||
Protein Properties | Length: 124aa MW: 14050.8 Da PI: 11.1871 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.3e-31 | 28 | 86 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gC ++k+ver+++dp+ ++itY+g+H+h+ PK12935.1 28 TDVWAWRKYGQKPIKGSPFPRNYYRCSSSkGCAARKQVERNNNDPESFIITYTGHHTHP 86 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-31 | 13 | 88 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.73 | 22 | 88 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-27 | 22 | 88 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 27 | 87 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-27 | 29 | 86 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MSSMPRSRKR KNQQKKTVCH VTADNLSTDV WAWRKYGQKP IKGSPFPRNY YRCSSSKGCA 60 ARKQVERNNN DPESFIITYT GHHTHPRPTH RNSLAGSTRN KLSPPPNVTP IITKNSDQSP 120 STTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-20 | 29 | 89 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-20 | 29 | 89 | 18 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022973049.1 | 2e-59 | probable WRKY transcription factor 27 isoform X1 | ||||
Refseq | XP_023551273.1 | 2e-59 | probable WRKY transcription factor 27 isoform X1 | ||||
Swissprot | Q9FLX8 | 2e-57 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | A0A2P5FGQ4 | 4e-59 | A0A2P5FGQ4_TREOI; WRKY domain containing protein | ||||
STRING | XP_010060258.1 | 7e-57 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-50 | WRKY DNA-binding protein 27 |
Publications ? help Back to Top | |||
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