PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 124aa MW: 14902.1 Da PI: 10.4576 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 28 | 81 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+R ++t+ q++ Le+ F ++++++ e++ +LA+klgL+ rqV +W+qNrRa++k PK12360.1 28 RTR-RLTQAQVRLLETSFTNDHKLQSERKLHLASKLGLSPRQVAIWYQNRRARHK 81 444.89************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 102.6 | 3.2e-33 | 28 | 119 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rrl++ qv+lLE+sF++++kL++erK +la++Lgl+prqva+W+qnrRAR+kt+ +E dy++++ +++ + e++rLe+ev L++el++ PK12360.1 28 RTRRLTQAQVRLLETSFTNDHKLQSERKLHLASKLGLSPRQVAIWYQNRRARHKTQTVEFDYRSIQLKLEDVLVEKRRLEREVGMLKHELNR 119 789************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.84E-18 | 18 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-16 | 26 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-11 | 27 | 83 | No hit | No description |
Pfam | PF00046 | 6.4E-16 | 28 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-18 | 32 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 54 | 63 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 63 | 79 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MDFQCFDILI EETQQNQDLS KPLTGQRRTR RLTQAQVRLL ETSFTNDHKL QSERKLHLAS 60 KLGLSPRQVA IWYQNRRARH KTQTVEFDYR SIQLKLEDVL VEKRRLEREV GMLKHELNRA 120 QEML |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093963.1 | 1e-52 | homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2P5B6N3 | 8e-63 | A0A2P5B6N3_PARAD; Octamer-binding transcription factor | ||||
TrEMBL | A0A2P5FJ64 | 5e-63 | A0A2P5FJ64_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010093963.1 | 6e-52 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 6e-23 | homeobox protein 21 |