PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK07950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 710aa MW: 82199.1 Da PI: 5.9238 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69 | 1.1e-21 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke d++w v ++++ HnHel PK07950.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPTGEHHRDRKSMRCGCDAKMYLSKEIvdgDSQWFVVQFSNVHNHELL 159 59********************8888.******************************************99777899**************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-19 | 291 | 384 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.928 | 563 | 598 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 8.3E-8 | 570 | 598 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.6E-6 | 573 | 600 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 710 aa Download sequence Send to blast |
MTSRPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNDTSPSEA MISPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVK KKPTGEHHRD 120 RKSMRCGCDA KMYLSKEIVD GDSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKRES 240 DTMELLEACK VAKYADENFV YDFTVDENDK VENIMWSYSD SVHAYNMFGD VVYFDTSYRS 300 ITYGMLFGAW LGIDSNGRTI FFGCALLQDE TSRSFSWALQ TFVRFMRGNC PQTILTDLDP 360 GLRDAIQTDL PATKHVISVW NILSKVYSWF FQPLGSRFAE FKSEFDTLCR LETTEEFELQ 420 WNQMISVFRF NADKHIALLY SFRSSWAPSY TRGYLLARMA TTVYSKSVDG FLKGIFNAQT 480 CLRSFFEQVS ISANFQNQAR PEMQYMYTKT CIPIEEHARS ILTPFVFNEF QHELALSMQY 540 ATSEMANGSY IVRHFKKMDG ERLVIWVPED EQIHCSCKEF ESSGLLCRHA LRVFIVKNYF 600 QLPEKYYLNR WRRESSLVFY EENGTQHSND DWIPEFQCLM ENLFAESSIT RERSDYARSE 660 LTKQVARILN EVGNMPEAEG VAMDVTLSPN GYFEGTSGLV LDGVANAAPA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087643.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_024022178.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | W9QZ88 | 0.0 | W9QZ88_9ROSA; Uncharacterized protein | ||||
STRING | XP_010087643.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|