PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06612.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 440aa MW: 51159.6 Da PI: 9.6723 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 1.9e-07 | 233 | 264 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT+eE e ++ +k++G + Wk+ ++ ++k + PK06612.4 233 KWTPEEYECVLNFHKEHGAD-WKKLSKQLNK--HR 264 7*******************.********94..34 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6E-4 | 157 | 228 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-7 | 160 | 247 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9 | 230 | 277 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.854 | 233 | 275 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.81E-7 | 233 | 292 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.8E-9 | 234 | 292 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-6 | 248 | 285 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.62 | 276 | 344 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.2 | 280 | 346 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 286 | 345 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.68E-5 | 324 | 407 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.294 | 346 | 399 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
XRKKKRKREK DDGDNAVKNS ETDVQNLPKK KRKRENVPIE EALADNLGTE DKLDEVVRAS 60 DEGKKKVKST KRGEGDSKED DSKKDKKKKA KARKQVSDGK GNKQKVRTKK DSKTTETSEN 120 HSPQGKSKRV TFSDHVEVFS PSDSPSVQSK QVGGLVQGKR FTPEEDELVK AAVLAYIEER 180 GLGDAGLDMV LNCKSHREVK NCWKTIALAL PWRPRYSVYY RAHMIFERSD IHKWTPEEYE 240 CVLNFHKEHG ADWKKLSKQL NKHRLHVKDT FRRIKFTGVN KGRWSQDEYS KLFDLVNMDL 300 RLRASEQKRV KHGMLRDNIC WEIISKKLST RHHVGCCSKW YKQLTSPMVV EGLWDDTDDH 360 RLVDSLSDLD AACIEDVDWD NLLEHRTGDI CRKRWHQMVK HIGDHVNKPF SEQVEVLSKR 420 YSFDVLEARE EYNSKEPVDC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 7 | RKKKRKR |
2 | 1 | 8 | RKKKRKRE |
3 | 1 | 9 | RKKKRKREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109475.1 | 1e-155 | RNA polymerase I termination factor | ||||
Refseq | XP_018856837.1 | 1e-157 | PREDICTED: DNA-binding protein REB1 | ||||
Refseq | XP_018856838.1 | 1e-157 | PREDICTED: DNA-binding protein REB1 | ||||
TrEMBL | A0A2P5FTT3 | 0.0 | A0A2P5FTT3_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010109475.1 | 1e-155 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-119 | MYB_related family protein |