PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 653aa MW: 75175.3 Da PI: 8.1784 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3e-07 | 446 | 477 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT+eE e ++ +k++G + Wk+ ++ ++k+ + PK06612.1 446 KWTPEEYECVLNFHKEHGAD-WKKLSKQLNKH--R 477 7*******************.********943..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6E-4 | 370 | 441 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 373 | 460 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.51E-7 | 419 | 497 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9 | 443 | 490 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.854 | 446 | 488 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 6.7E-9 | 447 | 505 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-6 | 461 | 498 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.62 | 489 | 557 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.2 | 493 | 559 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-5 | 499 | 558 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-5 | 537 | 620 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.294 | 559 | 612 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MGEKKKHKSE KHKEKTNGHE KDDKEFPEDE EDTKKITDEV AETIKTTCLE GEDSTNEKAI 60 EQKELKEKKK KHKKDKKKKE GIAGISSSGE NCEDDEMDGH ELNKNFQDTS AVSSQVQQVE 120 KEKKKKKKKE GVDGISSSRE NVEDEVVKVQ ECNVVNDEMD CAEKKKNKKD RADGISSSGE 180 NAANCEMEEL VKGQGYNKNC QDTSVVDMNV EHAERKKKRK REKDDGDNAV KNSETDVQNL 240 PKKKRKRENV PIEEALADNL GTEDKLDEVV RASDEGKKKV KSTKRGEGDS KEDDSKKDKK 300 KKAKARKQVS DGKGNKQKVR TKKDSKTTET SENHSPQGKS KRVTFSDHVE VFSPSDSPSV 360 QSKQVGGLVQ GKRFTPEEDE LVKAAVLAYI EERGLGDAGL DMVLNCKSHR EVKNCWKTIA 420 LALPWRPRYS VYYRAHMIFE RSDIHKWTPE EYECVLNFHK EHGADWKKLS KQLNKHRLHV 480 KDTFRRIKFT GVNKGRWSQD EYSKLFDLVN MDLRLRASEQ KRVKHGMLRD NICWEIISKK 540 LSTRHHVGCC SKWYKQLTSP MVVEGLWDDT DDHRLVDSLS DLDAACIEDV DWDNLLEHRT 600 GDICRKRWHQ MVKHIGDHVN KPFSEQVEVL SKRYSFDVLE AREEYNSKEP VDC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 220 | RKKKRKR |
2 | 214 | 221 | RKKKRKRE |
3 | 214 | 222 | RKKKRKREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109475.1 | 1e-155 | RNA polymerase I termination factor | ||||
Refseq | XP_018856837.1 | 1e-156 | PREDICTED: DNA-binding protein REB1 | ||||
Refseq | XP_018856838.1 | 1e-156 | PREDICTED: DNA-binding protein REB1 | ||||
TrEMBL | A0A2P5FTT3 | 0.0 | A0A2P5FTT3_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010109475.1 | 1e-155 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-118 | MYB_related family protein |