PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06148.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 678aa MW: 77681.5 Da PI: 7.5876

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06148.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k + +w+vt + ++HnHel PK06148.1 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKASNESKPQRNRKSSRCGCQAYMRISKATelgGLEWRVTGFANHHNHELL 155 6************9998877356667999*************999****************99887889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-18	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.79	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.7E-6	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0013	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MSDEAGEMLV VYDDPSDHCS LSLDDTSSTA ESLDETRLSL ETTNDTVPYI GQRFSTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS 120 RCGCQAYMRI SKATELGGLE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDHEEESID LLRMCRNIKE 240 KDPNFKFEYT LDSNNRLENI AWSYASSIQA YDIFGDAVVF DTSHRLTVFD MPLGIWVGMN 300 NYGMPCFFGC VLLREESLGS FSWALKVFLG FMSGKAPQTI LTDQNMCLKE AISMEMPTTK 360 HALCIWMIVA KFPSWFNAVL GERYNEWKGE FYRLYNLESI EDFELGWREM VNSFGLHSNR 420 HIINLYGLRS LWALPFLRSH FFAGLTTIGQ SKSVNAFIQR FLSAQTRLAH FVEQAAAAVD 480 FKDQAGEQQT MQQNLHNICL KTGAPMESHA ASILTPHAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKAD GGRKVYWVPR EGIISCRCHH FEFSGILCRH ALRVLSTGNC FQIPDRYLPD 600 RWRRISTPLK LIQNAPSDHG EKVQFLQSLV STLVTESAKS KERLDMATEQ VSILLSQVRE 660 QPVSLQTTRE IPSFHRNI

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MSDEAGEMLV VYDDPSDHCS LSLDDTSSTA ESLDETRLSL ETTNDTVPYI GQRFSTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS  120
RCGCQAYMRI SKATELGGLE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDHEEESID LLRMCRNIKE  240
KDPNFKFEYT LDSNNRLENI AWSYASSIQA YDIFGDAVVF DTSHRLTVFD MPLGIWVGMN  300
NYGMPCFFGC VLLREESLGS FSWALKVFLG FMSGKAPQTI LTDQNMCLKE AISMEMPTTK  360
HALCIWMIVA KFPSWFNAVL GERYNEWKGE FYRLYNLESI EDFELGWREM VNSFGLHSNR  420
HIINLYGLRS LWALPFLRSH FFAGLTTIGQ SKSVNAFIQR FLSAQTRLAH FVEQAAAAVD  480
FKDQAGEQQT MQQNLHNICL KTGAPMESHA ASILTPHAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKAD GGRKVYWVPR EGIISCRCHH FEFSGILCRH ALRVLSTGNC FQIPDRYLPD  600
RWRRISTPLK LIQNAPSDHG EKVQFLQSLV STLVTESAKS KERLDMATEQ VSILLSQVRE  660
QPVSLQTTRE IPSFHRNI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023562.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_024023563.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2P6PCK3	0.0	A0A2P6PCK3_ROSCH; Putative transcription factor FAR family
STRING	XP_008381369.1	0.0	(Malus domestica)
STRING	EMJ26358	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]