PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK04832.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HSF

Protein Properties

Length: 288aa MW: 32779.9 Da PI: 4.9822

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK04832.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.8	4.6e-35	22	112	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k y++++d++++++isw+ +g++f+v+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F+k++k+ll++i+ PK04832.1 22 FLTKSYQLVDDPTIDDVISWNYDGSTFIVWDPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDFFRKNEKQLLCEIQ 109 9***************************************************************99.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k PK04832.1 110 RRK 112 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.8E-36	12	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.1E-52	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.86E-33	19	111	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.5E-31	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
CDD	cd14686	0.00516	153	176	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.1E-4	153	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAVETNGELS AADSQKPLPT PFLTKSYQLV DDPTIDDVIS WNYDGSTFIV WDPTVFARDL 60 LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFSNDFFRKN EKQLLCEIQR RKIATPTPTV 120 AAIPTARPII SPSNSDEEQV FSSNSSSIIA PTELVDENER LRKENQQLKK ELAEMKTLCS 180 SIFNMVSNYA CVQSHSSFQT EEFLEMKPLD LMPGKRFGDE IDSTLGIKRA RADDGEEVAA 240 AVVVENAMNL RLQQQPAGVE VKSEPLDVDH QDKPWLKQCH RANQRVCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	22	111	29	129	Heat shock factor protein 1
5d5v_B	2e-23	22	111	29	129	Heat shock factor protein 1
5d5v_D	2e-23	22	111	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00575	DAP	Transfer from AT5G62020	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107420.1	1e-139	heat stress transcription factor B-2a
Swissprot	Q9SCW4	5e-84	HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBL	A0A2P5BPV9	1e-156	A0A2P5BPV9_PARAD; Heat shock transcription factor
STRING	XP_010107420.1	1e-139	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2037	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	7e-80	heat shock transcription factor B2A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]