PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01155840G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 83aa    MW: 8490.44 Da    PI: 9.9959
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01155840G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof98.83.5e-313883348
           zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48
                      +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrn
  PH01155840G0010 38 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRN 83
                     57899****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-233583IPR003851Zinc finger, Dof-type
PfamPF027012.5E-274083IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.1174183IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MAGAGGAAAA VQPAAAARSS SGSAGGGTGS GGVADPRAEA LRCPRCDSAN TKFCYYNNYS  60
LSQPRHFCKA CKRYWTRGGT LRN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01155840G0010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038154e-70AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBankAP0149634e-70AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957815.11e-34dof zinc finger protein 2-like
SwissprotQ9FZA43e-26DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A3L6FP361e-34A0A3L6FP36_MAIZE; Dof zinc finger protein DOF1.4
STRINGGRMZM2G064655_P013e-33(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88953041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.23e-28Dof family protein