PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003922G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 342aa    MW: 36882.3 Da    PI: 6.1242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003922G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.8e-27120180158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp++++++Y+g+H++
  PH01003922G0080 120 VDDGHSWRKYGQKEILGTKHPRGYYRCTHRnsqGCVATKQVQRTDEDPTLFNVIYHGTHTC 180
                      59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27111181IPR003657WRKY domain
PROSITE profilePS5081122.378115178IPR003657WRKY domain
SuperFamilySSF1182906.15E-25118180IPR003657WRKY domain
SMARTSM007745.7E-38120182IPR003657WRKY domain
PfamPF031064.7E-26121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDSMEGNGGS RLVVTELSHI KELVKQLEVQ LGGSPELCKH LVSQIFSLTE RSIGMIKSGS  60
FDGRKRAAGD AGLDSPLSTT PSPLSDVSDV PFKTNKKRKT MEKRQYQITV SSTGGAETPV  120
DDGHSWRKYG QKEILGTKHP RGYYRCTHRN SQGCVATKQV QRTDEDPTLF NVIYHGTHTC  180
VQKAVAGQAA AAGKNQPLQN PDAHCLLQSM SSSLTVKTEG LATEPQDWST MPFCLSSPVT  240
GLAPEHNPFS TPSTPENCFA RRVSLSPSLV SPATSDSNHL SMAPFHVAGN AEWCAQSELQ  300
EVVSALVAVT STPVPAMETD FSVDGFEFDP DFTIDVSSFF E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22120180868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003922G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0974350.0FP097435.1 Phyllostachys edulis cDNA clone: bphylf045f19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200629.11e-140WRKY transcription factor WRKY62-like
TrEMBLA0A1D8F0I20.0A0A1D8F0I2_9POAL; WRKY74-1 protein
STRINGOPUNC09G05480.11e-151(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-33WRKY family protein