PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002604G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 769aa    MW: 84046.7 Da    PI: 8.5185
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002604G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07134155325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      t +C f+ar G Ck G +C+F H
  PH01002604G0140 134 TTICTFYAR-GRCKKGKSCTFLH 155
                      789******.************* PP
2zf-CCCH21.93.1e-07232253325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      t +C f+ar G Ck G +C+F H
  PH01002604G0140 232 TTICTFYAR-GRCKKGKSCTFLH 253
                      789******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.469131158IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4131157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6131156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5134156IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4134155IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4229255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469229256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6229254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5232254IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4232253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MASAGRGSGP AGGMPVKDEI SEADMEIMET PEKEAGRVGS KRVRDSPNAK GSHGFIGVTT  60
AEKKPTLQFH NNVKFLKKAG NGNLVHPNVD GTSKMGGLYL HDIHGSQTLP DSNALRFSSS  120
SPGGDLENKT RKPTTICTFY ARGRCKKGKS CTFLHEGEGS GSDNRWSKEE KVGVIAPVGY  180
GNHRGSEEGS QAQRLSNLEE PDFENLAGSS KVELYRTLIH AYDLENKTRK PTTICTFYAR  240
GRCKKGKSCT FLHEGEGSGS DNRWSKEEKV GVIAPVGYGN HRGSEEGSQA QRLSNLEEPD  300
FENLAGSSKV ELYRTLIHAY GEDSRGLTHP VGKHNPTTLK VSQGRFCRID DSWTTKSTTP  360
VNELGQIPVV QEKNHEPHFM GRHISLPGDS YFDGRGTFPR LHQDGGKLQS NVTMGNIISD  420
SHVSRTYLEP LNPDYRYHPF DSSISLDSLQ PNEKLSAYVG TTENLPPKHQ KEHSSRRASY  480
SSHSLTGLKN SGHDSSDHSL GSPPLRATSH LGMQSLHQLT PGIEKVGLHK DVDLDKGCST  540
RTPALLVNSS QQPAAMLSGH FSPIKDEVWI TSVPFVPNFP GSTSSQYDRL VDSVDPPIVE  600
SINNPKPSNI SCSISSQHTD ENVIVGGNTD KLLNHNDKSA RNMPAKGSNE IAGLIASERG  660
RSSSLDGDNR VKACERKNDA AINNEKTRDF RFHLAEYVKD LVKPIWKEGN LSKDAHKLIV  720
KKSVDKVLAS LEPHQVPASE ELISNFITAS GTKIEKLVKA YVDKHRTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002604G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0A9DUH90.0A0A0A9DUH9_ARUDO; Uncharacterized protein
STRINGOGLUM05G22800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-17C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]