PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002320G0310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25827.8 Da PI: 5.7783 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107 | 1.5e-33 | 19 | 117 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aC aCk++rr+C +dC+la+yfp+++p+ f+n+h+lFG+sn+l++l+++ +++ +dam+++++eA+a+ P +G+v++i +l +ql+q +a+l PH01002320G0310 19 ACVACKYQRRRCRADCPLARYFPHDRPRLFRNAHRLFGVSNILQTLDRVGPDRSNDAMRAIAFEADAWDMYPAHGCVAIIAALLHQLRQDEAQL 112 7********************************************************************************************* PP DUF260 95 allke 99 ++l++ PH01002320G0310 113 HQLNA 117 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.336 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-32 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MPARQQQGVG GGGSSGTPAC VACKYQRRRC RADCPLARYF PHDRPRLFRN AHRLFGVSNI 60 LQTLDRVGPD RSNDAMRAIA FEADAWDMYP AHGCVAIIAA LLHQLRQDEA QLHQLNARLD 120 AYRGGGIIAE ATPSSSSMIA LPLMENNSNI MYQPRLYNNN DDIDASLLWT MQRQYDNNVV 180 VHMADGIPQQ QGHQHFLLDT STGGQHEYDD ISPFLENIDN EEEMPFESSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-21 | 15 | 137 | 8 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-21 | 15 | 137 | 8 | 131 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002320G0310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-47 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191288.1 | 3e-55 | LOB domain-containing protein 4-like, partial | ||||
TrEMBL | A0A2S3HLA1 | 1e-42 | A0A2S3HLA1_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-31 | LOB domain-containing protein 27 |