PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002018G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 317aa    MW: 33996.1 Da    PI: 6.7848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002018G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY888e-28120180259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+r++edp v++++Y+geH+++
  PH01002018G0330 120 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqGCTATKQVQRTDEDPAVFDVVYHGEHTCR 180
                      8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28114180IPR003657WRKY domain
PROSITE profilePS5081122.435114177IPR003657WRKY domain
SuperFamilySSF1182902.35E-25118180IPR003657WRKY domain
SMARTSM007745.3E-40119181IPR003657WRKY domain
PfamPF031066.1E-27120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEGVEGNYGG GNLQLVSELS RVQELVRQLE LHLHAPSSSV DLCRHLAAQV IALIDRSIGI  60
VRSAAHFPDT PTPPLSGTPS PLSDVFDQPF KTNTKKRKAT AKWTSQVRVS AAGGAEGPAD  120
DGHSWRKYGQ KDILGAKHPR AYYRCTHRNS QGCTATKQVQ RTDEDPAVFD VVYHGEHTCR  180
PNAGAAVKRP PQHQKHNPHA QSLLQSLSAG LTVNTDSCLQ NAAASPLTPE NCSARGVSPS  240
LASPVAPDPN GGLAMSSCPV IGYREWKMSD GDLQELVSAL AAVSAVPAPM PTVDAEFMPS  300
YFEFDPSFDI DAPNLFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-25120180969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002018G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1000400.0FP100040.1 Phyllostachys edulis cDNA clone: bphylf040n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187901.11e-129probable WRKY transcription factor 41
TrEMBLA0A1D5UYQ91e-128A0A1D5UYQ9_WHEAT; Uncharacterized protein
TrEMBLA7X9Y51e-128A7X9Y5_WHEAT; Transcription factor WRKY
STRINGEMT159141e-129(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-26WRKY family protein