PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001998G0220

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 498aa MW: 53043.4 Da PI: 7.6626

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001998G0220	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.9	4.4e-13	168	229	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++++r+ r+++NR +A+ sRqRKk ++eeLeekvk++ + +L ++++ e a+l+++ PH01001998G0220 168 EEDRRRAARLMRNRDSAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFVMVENATLRQQ 229 68999*********************************999***99999888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-13	167	232	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-11	168	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.749	170	230	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-15	172	230	No hit	No description
SuperFamily	SSF57959	6.88E-11	172	230	No hit	No description
CDD	cd14704	5.75E-19	173	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MAEPALLDSS PFDLGHYPAH LFDPDLPLAG GDFPLGDFAG AGGDCDGLDF DLPIDFSIDD 60 FLLRSPDRDD SGEGSAAGSG PTASSSSPTS SAANSAVAND SCEVKHEESD EGRSGAAPNW 120 SLKRKQASPG LSSDAAKCRR SGDGEVSPSA SASRAAVDSD EGRAVGEEED RRRAARLMRN 180 RDSAQLSRQR KKRYVEELEE KVKSMHSVIN DLNSKISFVM VENATLRQQL GSGGGNCRPP 240 GVYPPAPLPG MHFPWAPGYA LRPHGSHVSL VPIPRLKPQQ PVPASKVVKK PESKKAVENK 300 SKSKSKTKKV ASISLLGFLC VVLVFGAFIP GFNHSFGMRG ESDNAMFRNF GQSHASVLSV 360 TNHGKGPKDG LNNSDMIGID LGKMMGNADR AEQRHQPADN SSEILPALLY VPRNGKHVKI 420 NGNLIIHSVL ASEKAVAHGA SKCNSDQSGV DRKETSVAIA RYLSPPGKDM NPQEKSPADG 480 PLAQWFREGM AVINFIY*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MAEPALLDSS PFDLGHYPAH LFDPDLPLAG GDFPLGDFAG AGGDCDGLDF DLPIDFSIDD  60
FLLRSPDRDD SGEGSAAGSG PTASSSSPTS SAANSAVAND SCEVKHEESD EGRSGAAPNW  120
SLKRKQASPG LSSDAAKCRR SGDGEVSPSA SASRAAVDSD EGRAVGEEED RRRAARLMRN  180
RDSAQLSRQR KKRYVEELEE KVKSMHSVIN DLNSKISFVM VENATLRQQL GSGGGNCRPP  240
GVYPPAPLPG MHFPWAPGYA LRPHGSHVSL VPIPRLKPQQ PVPASKVVKK PESKKAVENK  300
SKSKSKTKKV ASISLLGFLC VVLVFGAFIP GFNHSFGMRG ESDNAMFRNF GQSHASVLSV  360
TNHGKGPKDG LNNSDMIGID LGKMMGNADR AEQRHQPADN SSEILPALLY VPRNGKHVKI  420
NGNLIIHSVL ASEKAVAHGA SKCNSDQSGV DRKETSVAIA RYLSPPGKDM NPQEKSPADG  480
PLAQWFREGM AVINFIY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	192	RRRAARLMRNRDSAQLSRQRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001998G0220

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655320.2	0.0	PREDICTED: bZIP transcription factor 17-like
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A0A9JME2	0.0	A0A0A9JME2_ARUDO; Uncharacterized protein
STRING	LPERR05G13000.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-36	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]