PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001800G0280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C3H | ||||||||
Protein Properties | Length: 379aa MW: 40455.4 Da PI: 7.0927 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.6e-08 | 117 | 137 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg PH01001800G0280 117 ACPDFRK-GGCKRGDACEYAHG 137 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.4E-5 | 112 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 113 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 116 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-6 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 147 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 147 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MMMMGEGVSV PPWGSLPVSG VDVGGGAAGD EMTPYLLAAL RQYLPSNDVG VSADDEEEAA 60 LGAAVDAYAC DEFRMYEFKV RRCARGRSHD WTECPFAHPG EKARRRDPRK YHYSGTACPD 120 FRKGGCKRGD ACEYAHGVFE CWLHPARYRT QPCKDGTACR RRVCFFAHTP DQLRVLPPQQ 180 SSPRSAASSP LAESYDGSPL RRQAFESYLS KSIMSSSPTG TLISPPKSPP SESPPLSPGE 240 AGVILRGSWP GVGSPVSDVL ASLRQLRLSK AHSAPSGGWS AYPSSVVSYG SPKAAGLYSL 300 PSTPRATTAT VTTASSLMPN LEPLDLGLID EEQPVERVES GRALREKVFE RLSRDGAGSS 360 NAAAGAGGPD VGWVCDLIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001800G0280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096141 | 0.0 | FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879384.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9FU27 | 0.0 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A0E0MSJ1 | 0.0 | A0A0E0MSJ1_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WLL6 | 0.0 | A2WLL6_ORYSI; Uncharacterized protein | ||||
TrEMBL | B7EQW0 | 0.0 | B7EQW0_ORYSJ; C3H transcription factor | ||||
STRING | ORUFI01G06440.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0192000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-85 | C3H family protein |
Publications ? help Back to Top | |||
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