PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001344G0380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 28562.6 Da PI: 8.6395 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 10 | 33 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t+lC++ GtC+y +C+FaH+ PH01001344G0380 10 RTKLCCNVWT-GTCPYVTNCNFAHS 33 6888888888.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3e-06 | 82 | 107 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ PH01001344G0380 82 YKGRHCKKFYTEEGCPYGDACTFLHD 107 78888********************7 PP | |||||||
3 | zf-CCCH | 42.3 | 1.2e-13 | 164 | 189 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k+++C+ + tG+C++G++C+FaHg PH01001344G0380 164 WKMRICNKWEMTGYCPFGSKCHFAHG 189 89***********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.108 | 2 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 7 | 39 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-10 | 9 | 40 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-5 | 10 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.57 | 10 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 81 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-7 | 81 | 109 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-9 | 81 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-16 | 159 | 193 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-9 | 160 | 194 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-8 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 164 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MFFKTKLCFR TKLCCNVWTG TCPYVTNCNF AHSVEELRKL PPNWLEIMAA HEEATEQREE 60 HQIPIMTSSS VVTGDNGSGR AYKGRHCKKF YTEEGCPYGD ACTFLHDEQS KARESVAISL 120 SPSVGGGSYN SVGGGSYNSA ASVGGGSYNS AAAANGPTQK PSNWKMRICN KWEMTGYCPF 180 GSKCHFAHGA AELHKYGGGL VDMDSRDAAS TPDSKQAAVL RKMIRKGGPR LVFCRLCVRG 240 SVPLTSLEVL VGIAKPGLNR VCVL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001344G0380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP091338 | 0.0 | FP091338.1 Phyllostachys edulis cDNA clone: bphyem205b06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198349.1 | 1e-118 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-107 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A446YGU4 | 1e-119 | A0A446YGU4_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446YGY5 | 1e-119 | A0A446YGY5_TRITD; Uncharacterized protein | ||||
STRING | Traes_7DL_D19D5E59C.1 | 1e-118 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32360.1 | 3e-75 | C3H family protein |