PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001280G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 273aa    MW: 29681.8 Da    PI: 7.8216
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001280G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.65.1e-23101160259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg+ WrKYGqK+++g ++pr YYrCt++  gC+++++v++s+e+p + +i Y g+H+++
  PH01001280G0060 101 ADGFIWRKYGQKDINGCRHPRLYYRCTYRdqGCSATRRVQQSQEEPAAYVIAYYGKHTCR 160
                      6***************************9999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2493160IPR003657WRKY domain
PROSITE profilePS5081119.89895157IPR003657WRKY domain
SuperFamilySSF1182902.48E-2296160IPR003657WRKY domain
SMARTSM007742.5E-30100161IPR003657WRKY domain
PfamPF031063.2E-23102160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MALTTPTAVV LELMTMGQQS AAHLGELLRA ASPPPPGEHQ ALAVEILRCC DRVIAALSRA  60
TGRKRKMMER GSAACSLPVM PSKKKARGAE ALREVKTSTT ADGFIWRKYG QKDINGCRHP  120
RLYYRCTYRD QGCSATRRVQ QSQEEPAAYV IAYYGKHTCR DDAVCQKGAL PPPTVVDFGS  180
NAWGGVDADR NWGSPLPMLS AEQRCCDGET SQGWSSPSSL SEVQQKVQEF GVAGVEVPCY  240
VSPGLNFLDD CLDWGSVVNS LDFGGLHHTA MLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-161021601069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001280G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932870.0FP093287.1 Phyllostachys edulis cDNA clone: bphyem107a19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644916.19e-99PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A286LLT71e-100A0A286LLT7_9POAL; Drought resistance protein
STRINGOB01G44170.14e-98(Oryza brachyantha)
STRINGTraes_3B_D6F86ABC3.22e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.12e-21WRKY DNA-binding protein 66