PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001065G0460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 24172.3 Da PI: 7.4763 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H PH01001065G0460 85 HRCSVCGKAFASYQALGGHKASH 107 79**********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.1E-10 | 85 | 107 | No hit | No description |
Pfam | PF13912 | 5.2E-13 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.972 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.1E-10 | 142 | 169 | No hit | No description |
Pfam | PF13912 | 3.7E-13 | 146 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 147 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 147 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 149 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAVEAVLEAA VIPSPPSRTR EMAAAACNDE ESTVQHVEGW AKRKRSRRQR ALEPTEEEYL 60 ALCLLMLASG HRGDVRVPEP AAAEHRCSVC GKAFASYQAL GGHKASHRKP LAPAPAAGAE 120 EPQATAPSSS AVSSSGSGEA GTGSKVHECN VCRKTFPTGQ ALGGHKRCHY DGTIGSAAAG 180 PKAAAAATNT GRAFDLNLPA LPDIAERCTA EAEEEDVLSP LAFKKPRLMI PA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001065G0460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092590 | 0.0 | FP092590.1 Phyllostachys edulis cDNA clone: bphyem120h18, full insert sequence. | |||
GenBank | FP100364 | 0.0 | FP100364.1 Phyllostachys edulis cDNA clone: bphylf036a08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150049.1 | 1e-78 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 1e-46 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A3B6MLT2 | 2e-77 | A0A3B6MLT2_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_54674.1 | 9e-73 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-39 | salt tolerance zinc finger |