PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000824G0690
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 369aa    MW: 41699.5 Da    PI: 7.9134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000824G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07427226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k++lC+ff+  G C  Gd C F+H+
  PH01000824G0690  4 KRVLCKFFMH-GACLKGDYCEFSHD 27
                     89****8888.*************5 PP
2zf-CCCH28.92e-093555526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C f+++ G C+yG+rC+++H+
  PH01000824G0690 35 VCTFYQK-GACSYGSRCRYNHV 55
                     5******.*************7 PP
3zf-CCCH19.91.3e-06151172426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ fa+ G C+yG+ C+ +Hg
  PH01000824G0690 151 PICS-FAAAGNCPYGEECPHMHG 172
                      5788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.464229IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7327IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5773057IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-43156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-53254IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-73555IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.117147174IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4148173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4153172IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.17E-10205280No hitNo description
Gene3DG3DSA:3.30.40.109.7E-10209275IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00395215275No hitNo description
PfamPF136393.8E-7215274IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7216273IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.327216274IPR001841Zinc finger, RING-type
PROSITE patternPS005180240249IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.648303332IPR000571Zinc finger, CCCH-type
SMARTSM003560.01303331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSTKRVLCKF FMHGACLKGD YCEFSHDWSD QPNNVCTFYQ KGACSYGSRC RYNHVKVCRN  60
PTVPPPSSST TTCVASTSLQ LLCSGRPLHM GHQTDSSNQR HQISTDMLAH SASKPAWRND  120
FQHDSVLDDG IDWSSNRTVQ NQTSMKLAEL PICSFAAAGN CPYGEECPHM HGDLCTTCGK  180
MCLHPYRPGE REEHIKLCEK NHKRLEALKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC  240
DHPFCISCIR NWRGNSPTSG MDMNSALRAC PICRKLSYYV IPSVIWYFSK EEKMEITESY  300
KAKLKSIDCK YFDFGTGTCP FGTSCFYKHA YRDGRLEEVK LRHLDADDGS TVIAKNIWLS  360
DFLSQLHL*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000824G0690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943560.0FP094356.1 Phyllostachys edulis cDNA clone: bphyem202c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148371.10.0E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A287WBU80.0A0A287WBU8_HORVV; Uncharacterized protein
STRINGMLOC_63870.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]