PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000716G0640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 31099.6 Da PI: 6.6287 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.3 | 6.6e-33 | 126 | 183 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ PH01000716G0640 126 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 183 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-33 | 110 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 117 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 120 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 125 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 126 | 183 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAGDRPEGVD GGGDWLFAGD ALAEYSSAVF AELDWPGGLA EGAGELPALD LPEAVPAPVA 60 RPEEMPARSG DAGASSSSSG DGAAPENSGK PAAEAASVKP AVKRGQKRAR QPRFAFMTKS 120 EIDQLEDGYR WRKYGQKAVK NSPFPRSYYR CTNSKCTVKK RVERSSDDPS VVITTYEGQH 180 CHHTASFQRG VGGAAHIHSA AAVALAEQMS FVSAQQQQQL YSLPPLHPQV NPPSSETVVS 240 SMPTSLRQLS GCEELRRASY SPTALTTMVQ SPSSSSFDKG LLDDIVPPGV RHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-26 | 115 | 182 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-26 | 115 | 182 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 107 | VKRGQKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000716G0640 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097266 | 1e-159 | FP097266.1 Phyllostachys edulis cDNA clone: bphyem125j22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173159.1 | 1e-110 | probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 2e-55 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | F2E2C8 | 1e-125 | F2E2C8_HORVV; Predicted protein | ||||
STRING | MLOC_59259.2 | 1e-128 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 6e-53 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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