PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000626G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 617aa    MW: 67019.6 Da    PI: 6.8794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000626G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12463509455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PH01000626G0180 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 509
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-5060245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15462513No hitNo description
SuperFamilySSF474591.1E-18462524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18463521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVMKMEIDED GANVGTGGAW TEEDRALSAT VLGTDAFAYL TKGGGAISEG LVAASLPVDL  60
QNKLQELVES ECPGAGWNYA IFWQLSRTKS GDLVLGWGDG SCREPRDGEV GAAASAGNDD  120
TKQRIRKRVL QRLHTAFGGA DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAT  180
GVPLWIPNTE RSVFPANYCY RGYLASAAGF RTIVLVPFET GVLELGSMQQ VAESSDTLQT  240
IKSVFAGASG NKTAVQRHEG NGPIERSPGL AKIFGKDLNL GRPSAGPVVG VSKADERSWE  300
QRTAGGGSSL LPNVQKGLQN FTWSQARGLN SHQQKFGNGI LIVSNEATHR NNGAADSPTA  360
TQFQLQKAPL QKLPQLQKPA QIVKSPQLVN QQQLQPQVPR QIDFSAGTSS KSGVLVARTA  420
VLDGDSAEVD GLCKEEGPTP AVEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNIS KMDKASLLGD AITYITDLQK KLKEMEAERE RFLESGMVDP RERAPRPEVD  540
IQVVQDEVLV RVMSPMENHP VKKVFQAFEE AEVCAGESKV TGNNGTVVHS FIIKCPGSEQ  600
QTREKVIAAM SRVMSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28457519264Transcription factor MYC2
5gnj_B6e-28457519264Transcription factor MYC2
5gnj_E6e-28457519264Transcription factor MYC2
5gnj_F6e-28457519264Transcription factor MYC2
5gnj_G6e-28457519264Transcription factor MYC2
5gnj_I6e-28457519264Transcription factor MYC2
5gnj_M6e-28457519264Transcription factor MYC2
5gnj_N6e-28457519264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000626G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952590.0FP095259.1 Phyllostachys edulis cDNA clone: bphyem203o24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643964.10.0PREDICTED: transcription factor bHLH13
TrEMBLA0A0E0JG400.0A0A0E0JG40_ORYPU; Uncharacterized protein
STRINGOB01G18800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-71bHLH family protein