PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000599G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 337aa    MW: 34786.1 Da    PI: 6.846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000599G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09191238455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PH01000599G0590 191 SHSLAERVRREKISERMKLLQDLVPGC----CKVTGKAVMLDEIINYVQSLQ 238
                      8*************************8....4559****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-15185245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-11185242No hitNo description
Gene3DG3DSA:4.10.280.103.3E-15187243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6191238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAHDGFLGSF HGLAWPFAHG AAPAPFDALQ LQRVVMGSAG AGWEHDSALS LLVSSPSSVA  60
AAATGGVHEA MLMDELASRL GGVCGGLGVP SPPSSRYASC YSTPVSSPSK SAPPVPALLA  120
ADTVLAERAA RLSCLPAAGS ERQEMQGVTG RRPPAAGEAG HGGNGKGKEA AAEPPKDYIH  180
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCCKV TGKAVMLDEI INYVQSLQRQ  240
VEANQPTAPA PSSLPLPPPA YSLEGSSSAF CYASSQGTAM QSVVTNVKGF EMPSSFANHG  300
VPGSSLDGFQ SGNSQIGSLW EDDLHSVVQM GFRGNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000599G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745732e-59EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.11e-105transcription factor BHLH089-like
TrEMBLA0A270R3Z91e-103A0A270R3Z9_9POAL; Uncharacterized protein
STRINGSi026387m1e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.16e-40bHLH family protein