PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000528G0920
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 285aa    MW: 32605.5 Da    PI: 8.9696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000528G0920genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18137223195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp +f++++  + +++ +++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l++ ++f  ++
  PH01000528G0920 137 FVKTMVRSHVSSCFWLGLPTRFCKKYL-P-PRELKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF--KI 222
                      89************************5.3.35569***************..555444..***********************9987777..44 PP

                      E CS
               B3  95 k 95 
                       
  PH01000528G0920 223 Y 223
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.69E-24130226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-21130226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-27135226No hitNo description
PfamPF023623.0E-17137224IPR003340B3 DNA binding domain
SMARTSM010191.3E-23137228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MATEASSAAA GAAYEEERRN RVLENLKHLK DLGISKMSKS LLQAARLPDK STRASPKSRK  60
KFEATTEVRR SSRARTSVSY RDDFDELDSF LRRRRVSKSA EHGREYTGRI SSYEQQQRAF  120
KRAEKFQDSL GPENPSFVKT MVRSHVSSCF WLGLPTRFCK KYLPPRELKM VLEDEEGVEF  180
DAVYIGNRTG LSGGWRGFSM HHNLEDGDSL VFELVEPDRF KIYIVKAMDE DVNEAEPDDK  240
NADVDTNDTD LTKEEPDQKD SPVAEHPSNP EPLKGAKRRK LRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000528G0920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949790.0FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568233.11e-165B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-141Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2K2D9S91e-159A0A2K2D9S9_BRADI; Uncharacterized protein
STRINGBRADI2G22130.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]