PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000400G0800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 567aa    MW: 62171.5 Da    PI: 6.3242
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000400G0800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.71.2e-11258349297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +++r w  +De  +L++l + + ++g  p    d f++ + ++++ k   ++++ +K+ +L++++  ++        ++ ++eh q+ ++ls  
  PH01000400G0800 258 RVRRTWAPDDEAQILKALAEHRREHGHPPLRCNDVFFDSLAERLEDKsWRHNEIKDKVNSLRRRYLSNSVP-----TTTTDNEHAQQLYDLSVA 346
                      6789****************************************876267899*************99888.....6678899*********** PP

           DUF573  95 iWg 97 
                      +Wg
  PH01000400G0800 347 VWG 349
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-14260349IPR007592Protein of unknown function DUF573
Gene3DG3DSA:3.40.50.3004.2E-4510546IPR027417P-loop containing nucleoside triphosphate hydrolase
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MARKRVAPPP QPAASSSSGG EQEEEESSYS PSQDQEVADK EKEEAVVEQP PSAVARSLPA  60
IPKNRASQPQ GTSSSSEEDD DEGEDGSDSS DSHDESGGSP NKDAMPDELA RSPQKRAKAT  120
AQHRAEEDGD PSDKALQPKK ANEPSAELAK SPQKRAKAPA HHRGEVDGDP SDKAPQPKKT  180
NVPSAELAKS PPPKKKNKKA PAQQLGEEEV QTADSSNNEP GETAPHRDPL PKRNVLNSHR  240
PAAHKRRKEA PPKLKSKRVR RTWAPDDEAQ ILKALAEHRR EHGHPPLRCN DVFFDSLAER  300
LEDKSWRHNE IKDKVNSLRR RYLSNSVPTT TTDNEHAQQL YDLSVAVWGG MPTTAAAGAE  360
NSGEEQRDFD KMCGLYPHLA QEVKVLAEAH PTLKVSFSRL DDSRARMMDA KLAKVSWAKV  420
KLQVQMEIKV QIILLLYYLL VLMMSSGTGM RSRLFGGACL LFDVFGGECT GQFIAEIRFS  480
MKVGEKKRIA QELATFSGDM FMLLGPFHVL VEPGACDQSS GIHVAEFANF PEAVIALAKS  540
KAEELKDFST APNFNDDSKD ECLYSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000400G0800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2387857e-36AJ238785.1 Zea mays mus1 gene, exons 1-13.
GenBankBT0550467e-36BT055046.1 Zea mays full-length cDNA clone ZM_BFb0036E03 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00238.13e-08DNA-binding storekeeper protein-related transcriptional regulator