PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000356G1090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 620aa    MW: 67568.8 Da    PI: 8.2094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000356G1090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07520569147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIa.rtmg..kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+Wk +  + +g   +Rt  ++k++w ++
  PH01000356G1090 520 RRPFSVAEVEALVEAVEQLGTGRWKDVKfHGFGnaDHRTYVDLKDKWKTL 569
                      6789999*******************873445699999999999999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.0E-4332403No hitNo description
SuperFamilySSF542361.45E-6332404IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.027333397IPR000626Ubiquitin domain
PROSITE profilePS5129415.839515574IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-10516571IPR009057Homeodomain-like
SMARTSM007172.8E-5519572IPR001005SANT/Myb domain
CDDcd116602.10E-16521571No hitNo description
SuperFamilySSF466898.16E-15521602IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032204Biological Processregulation of telomere maintenance
GO:0042162Molecular Functiontelomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MVTQVKRSIR RNKNELHALD LLATTAGTLS ADQDNSSSRP NINGTAASYA TNRKSVETEQ  60
FDEVLPFKSV AVEKDGCKGC TVGCGGVCGF LRQINICLAE NSSTQNVADS VLESATAKPD  120
VLVKDSMVSC TKSCRLGRGL GTIPEYGTIG VCHPWSKRSA EVKQVHRARP TMIRSQVDGN  180
AKALHSLVGT MDLDTKLPSV VSSESSSGVH LCVHDRGHNS STLCWGKVQH AADRDDDENS  240
YGCVLPSTSG NKGGSMPHYI GDCRIRRLFA TRLRKAARNK ICGEMSNKGS KLNFCGKKIS  300
TTRRRVQRAM LKRKILAQRC FAKTSDEGIL TEIKLTIKSL NIPELLIEIP ENATVASLKR  360
TVTDAVTTII EGGLRVGVLL QGKNIQDDNK TLLQVGICHG GKLDNIDFTL ECEAGQDSHP  420
GVEAPEEIDF VGADVVEPLA TMKCEEPFPE TRVGDDNQQQ PMQAFPNCTL SDPADYPVEW  480
TAQEISASSQ AIIPVATPDV DALVPLSRSK RLDLGQRRTR RPFSVAEVEA LVEAVEQLGT  540
GRWKDVKFHG FGNADHRTYV DLKDKWKTLV RTASISPQQR RGKAIPQELL DRVLAAQAYW  600
SQQQAKLQGN PPFPEICPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A2e-514946013112Telomere binding protein-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000356G1090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625433.10.0telomere-binding protein 1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLA0A0D9Z0600.0A0A0D9Z060_9ORYZ; Uncharacterized protein
STRINGOGLUM02G38510.40.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-70TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]