PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000356G1090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 620aa MW: 67568.8 Da PI: 8.2094 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5e-07 | 520 | 569 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa.rtmg..kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+Wk + + +g +Rt ++k++w ++ PH01000356G1090 520 RRPFSVAEVEALVEAVEQLGTGRWKDVKfHGFGnaDHRTYVDLKDKWKTL 569 6789999*******************873445699999999999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 1.0E-4 | 332 | 403 | No hit | No description |
SuperFamily | SSF54236 | 1.45E-6 | 332 | 404 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 10.027 | 333 | 397 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.839 | 515 | 574 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-10 | 516 | 571 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-5 | 519 | 572 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.10E-16 | 521 | 571 | No hit | No description |
SuperFamily | SSF46689 | 8.16E-15 | 521 | 602 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0032204 | Biological Process | regulation of telomere maintenance | ||||
GO:0042162 | Molecular Function | telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MVTQVKRSIR RNKNELHALD LLATTAGTLS ADQDNSSSRP NINGTAASYA TNRKSVETEQ 60 FDEVLPFKSV AVEKDGCKGC TVGCGGVCGF LRQINICLAE NSSTQNVADS VLESATAKPD 120 VLVKDSMVSC TKSCRLGRGL GTIPEYGTIG VCHPWSKRSA EVKQVHRARP TMIRSQVDGN 180 AKALHSLVGT MDLDTKLPSV VSSESSSGVH LCVHDRGHNS STLCWGKVQH AADRDDDENS 240 YGCVLPSTSG NKGGSMPHYI GDCRIRRLFA TRLRKAARNK ICGEMSNKGS KLNFCGKKIS 300 TTRRRVQRAM LKRKILAQRC FAKTSDEGIL TEIKLTIKSL NIPELLIEIP ENATVASLKR 360 TVTDAVTTII EGGLRVGVLL QGKNIQDDNK TLLQVGICHG GKLDNIDFTL ECEAGQDSHP 420 GVEAPEEIDF VGADVVEPLA TMKCEEPFPE TRVGDDNQQQ PMQAFPNCTL SDPADYPVEW 480 TAQEISASSQ AIIPVATPDV DALVPLSRSK RLDLGQRRTR RPFSVAEVEA LVEAVEQLGT 540 GRWKDVKFHG FGNADHRTYV DLKDKWKTLV RTASISPQQR RGKAIPQELL DRVLAAQAYW 600 SQQQAKLQGN PPFPEICPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2roh_A | 2e-51 | 494 | 601 | 3 | 112 | Telomere binding protein-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000356G1090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625433.1 | 0.0 | telomere-binding protein 1 | ||||
Swissprot | Q9LL45 | 0.0 | TBP1_ORYSJ; Telomere-binding protein 1 | ||||
TrEMBL | A0A0D9Z060 | 0.0 | A0A0D9Z060_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G38510.4 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10824 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 2e-70 | TRF-like 2 |
Publications ? help Back to Top | |||
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