PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000107G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 277aa    MW: 29788.4 Da    PI: 9.7891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000107G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13103154155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r +h ++Er+RR+ +N+ ++ Lr+l+P+    + ++ + a+++  A++Y+k+L+
  PH01000107G0310 103 QRITHIAVERNRRRLMNDHLASLRSLIPSH---YIPRGDQATVVGGAINYVKQLE 154
                      799**************************9...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1594162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13101157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-11101154No hitNo description
PROSITE profilePS5088814.818102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-10108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLLLMEQWAD HAASASAAQM PFLALLQGAM EEEDARKRHG AFACPCPPVA DLDLLESCVT  60
QATAPQVASP GTRAERRRKR PRPRPRAAPP PEKRKKPEEA ESQRITHIAV ERNRRRLMND  120
HLASLRSLIP SHYIPRGDQA TVVGGAINYV KQLEQQLVAL QAAAAARRGG GVVATAASAA  180
SDGLFVSPQY TSYSEARDGS GVGVDVEAMA AVGGHVRVRV AGRRWPGRLV RAVAAMEDLR  240
LAVLHLAVTS VCHDAVVYCF NLKVVTKLLT LLCCLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17585RRRKRPRPRPR
27783RKRPRPR
37795RKRPRPRPRAAPPPEKRKK
47882KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000107G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554701e-179AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.21e-103transcription factor bHLH57
TrEMBLA0A0E0K8281e-112A0A0E0K828_ORYPU; Uncharacterized protein
STRINGOPUNC03G01600.11e-113(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-26bHLH family protein