PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000100G1590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39554.9 Da PI: 4.7792 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.9 | 5.3e-16 | 18 | 89 | 56 | 128 |
NAM 56 kewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + wy +s +++y +g+++ r +++gyWk+ + + + ++ vg+k +L fy+g+ap+g++t Wvmhey++ PH01000100G1590 18 NIWYLnWSDDQQTYDNGENTIRNAENGYWKSVDALR-IPT-STDIVGVKISLQFYEGQAPSGQRTGWVMHEYQV 89 557642677889999***************988755.544.5889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.81 | 1 | 110 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-21 | 15 | 110 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-7 | 27 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAQAYVQPAR QTIHLAGNIW YLNWSDDQQT YDNGENTIRN AENGYWKSVD ALRIPTSTDI 60 VGVKISLQFY EGQAPSGQRT GWVMHEYQVE QNDEANTPQD YKSLCTIFLQ GDKKLNVEDQ 120 RISRNANAPN DRLESYLQYL AEIEEQNAAM NSEIVASNQQ NFSPSKGQDE HKTHNAADAI 180 AFHRTLANEA YIETNDLLSS DPTASTSEYS SRRSMISEEY FDSDAFLREI LNDSNTTDEE 240 HKDCKFSISA PTNSDLVVIS LPEQGLVHNH DNNATVSGTS LEKSVPDGER DQHSNECPQY 300 NPSTSSCFPS SHVKRSRSNN SNSSQGSTKS PQRDRSIGKF GKIGKKYCCF GSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000100G1590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195723.1 | 1e-149 | protein ATAF2-like | ||||
TrEMBL | A0A3B6BYH0 | 1e-152 | A0A3B6BYH0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LTT2 | 1e-152 | A0A446LTT2_TRITD; Uncharacterized protein | ||||
STRING | EMT30661 | 1e-137 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10916 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-16 | NAC domain containing protein 2 |