PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000025G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 476aa    MW: 54648.2 Da    PI: 8.6205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000025G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1728116299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fk +     ++sg l++p kfa ++ g+   s  ++le+++g++++v++  +k  +  vl++GW +F++a +L+egD +vF l+g+s+f   v 
  PH01000025G0410  28 FKFM--MGDFRSG-LTIPQKFALNFRGQ--ISEVVKLETRDGNTYNVQV--TKELNNLVLRSGWVKFANAYELEEGDLLVFFLSGDSQF--EVL 112
                      5555..4445555.********999877..6779***************..**********************************9*99..777 PP

                      EE-S CS
               B3  96 vfrk 99 
                      ++++
  PH01000025G0410 113 IYDR 116
                      7665 PP
2B348.61.5e-15235326799
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      ++ +l  g lv+ k++a +h   ++++ t+tl ++s+ ++W+  ++   ++g+y+l++GW +Fv++n+L+e D+++F+++++ ++ +++v++++
  PH01000025G0410 235 NETSLFYGYLVICKDYAVQHL--PHRDETITLCHPSNsKTWDADFK-ISTDGTYILSAGWLGFVRDNKLQEDDVCIFEVSKSqRRDTMTVHMLK 325
                      555666789********9994..346679***996655*******3.344456*************************9988788889998876 PP

                      S CS
               B3  99 k 99 
                      +
  PH01000025G0410 326 A 326
                      5 PP
3B338.81.7e-123904711599
                      -EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  15 rlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l++ k++a ++  +ke++  + l+   +++  We k+ +r++ +r     GW +Fv +n+L+ gD+++F++ + +e +++v+++r 
  PH01000025G0410 390 SLTFKKDYAVKYLPDKEQN--VWLRRpeKNSTDWEAKFEIRNNTRRL---CGWTKFVTDNQLRPGDICLFERLKMKELTMNVHIIRG 471
                      4888899999996666675..666661155599*****999999995...4********************98889*******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.5924117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-2024119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2125119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-1925115No hitNo description
SMARTSM010193.6E-1327117IPR003340B3 DNA binding domain
PfamPF023622.5E-1527116IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-20224326IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-18224327IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-13228325No hitNo description
PROSITE profilePS5086313.07229327IPR003340B3 DNA binding domain
SMARTSM010192.7E-9230327IPR003340B3 DNA binding domain
PfamPF023629.7E-13238326IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-14372470IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-15373470IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.461376472IPR003340B3 DNA binding domain
CDDcd100173.49E-11377470No hitNo description
SMARTSM010192.9E-5378472IPR003340B3 DNA binding domain
PfamPF023622.7E-10390471IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDKCHTEWKK YVAHHCWQHM DDLDKSFFKF MMGDFRSGLT IPQKFALNFR GQISEVVKLE  60
TRDGNTYNVQ VTKELNNLVL RSGWVKFANA YELEEGDLLV FFLSGDSQFE VLIYDRSTCR  120
KELSCVVMNH FPCVHERSTS HDNHMQSPKS GRLAKRRKTS KRNPADCPLQ KSTERDLPPS  180
GGIQDTTNSG GLHTSTKYHY ILATGCNLTR AHKAKVDALE LKIRPEIPLY VTALNETSLF  240
YGYLVICKDY AVQHLPHRDE TITLCHPSNS KTWDADFKIS TDGTYILSAG WLGFVRDNKL  300
QEDDVCIFEV SKSQRRDTMT VHMLKASYHP PDGITSSGST MYGDSPLGYV VSQKTHLNDQ  360
QKSKIGKMVE AIQSETPIFV FVKGHGGNYS LTFKKDYAVK YLPDKEQNVW LRRPEKNSTD  420
WEAKFEIRNN TRRLCGWTKF VTDNQLRPGD ICLFERLKMK ELTMNVHIIR GEREV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000025G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.11e-145LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT61e-143Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A3B6KC211e-161A0A3B6KC21_WHEAT; Uncharacterized protein
TrEMBLA0A446SQV11e-161A0A446SQV1_TRITD; Uncharacterized protein
STRINGEMT089251e-151(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-22B3 family protein