PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400057277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 15452.8 Da PI: 9.8224 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 81.9 | 6.1e-26 | 11 | 99 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+ltp dv++++rlv+pkk+a++h + ++ +l+++d+s W++k++y+k+s+++++t+GW +Fvk++ L+++D+++F l ++++ PGSC0003DMP400057277 11 FRKELTPTDVGRNSRLVIPKKYATTHfpQ---IQDEELIIYDTSRTLWKFKYRYCKRSRSFLFTRGWLNFVKDKCLRAKDMIIFNLCESKN 98 89************************633...35668************************************************987644 PP E CS B3 90 f 90 + PGSC0003DMP400057277 99 G 99 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-27 | 8 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-23 | 9 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.57E-25 | 10 | 93 | No hit | No description |
PROSITE profile | PS50863 | 13.563 | 11 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-23 | 11 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-17 | 11 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
DNVEFLYNEL FRKELTPTDV GRNSRLVIPK KYATTHFPQI QDEELIIYDT SRTLWKFKYR 60 YCKRSRSFLF TRGWLNFVKD KCLRAKDMII FNLCESKNGT KVNNCNTFVI DVVKNIEVLP 120 MDHQRRNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-20 | 10 | 98 | 13 | 107 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400057277 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-114 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350629.1 | 7e-56 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-25 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | M1D9V3 | 3e-90 | M1D9V3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085602 | 5e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 5e-28 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400057277 |
Publications ? help Back to Top | |||
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