PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 176aa MW: 19798.7 Da PI: 8.7666 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.6 | 1.7e-29 | 3 | 56 | 5 | 59 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +YkeClkNhAa +GghavDGCgEfmps ge+gt++ +kCaAC+CH +FHR+e+++ PGSC0003DMP400056594 3 KYKECLKNHAAGIGGHAVDGCGEFMPS-GEDGTVDVFKCAACNCHHSFHRKETVH 56 8*************************9.999*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 1.4E-28 | 3 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.4E-28 | 3 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-19 | 3 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.979 | 4 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.94E-15 | 105 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 107 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-23 | 109 | 165 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSKYKECLKN HAAGIGGHAV DGCGEFMPSG EDGTVDVFKC AACNCHHSFH RKETVHHHHP 60 CGYFPYIMPR ERPLALPLTS GGTGGGFRED QELLEMCSPN NNINGTLLKK RFRTKFSQEH 120 KDKMLALAEK LGWKLQRHDE GVVQQLCNEI GIKRHVFKVW IHNNKHTLGK KLTLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-22 | 110 | 167 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056594 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-122 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321484.1 | 1e-104 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q6YXH5 | 2e-59 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | M1D8C7 | 1e-128 | M1D8C7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084919 | 1e-129 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-58 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056594 |
Publications ? help Back to Top | |||
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