PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047343
Common NameLOC102582756
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 278aa    MW: 31409.8 Da    PI: 8.3799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047343genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013216238223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+ +Fs+   L  H ++ H
  PGSC0003DMP400047343 216 PCPQCHLRFSTVRALIDHVQKvH 238
                           5*****************99988 PP
2zf-C2H215.45.2e-05250272223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+k F+++  L+ H  + H
  PGSC0003DMP400047343 250 VCPRCSKGFRDPVALVEHVEReH 272
                           7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.14E-10459No hitNo description
Gene3DG3DSA:4.10.1110.102.5E-91053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.371055IPR000058Zinc finger, AN1-type
SMARTSM001540.00451352IPR000058Zinc finger, AN1-type
PfamPF014283.5E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-1090149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.73E-993149No hitNo description
PROSITE profilePS510397.91898145IPR000058Zinc finger, AN1-type
SMARTSM001540.007101142IPR000058Zinc finger, AN1-type
PfamPF014283.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.036215238IPR015880Zinc finger, C2H2-like
PfamPF138940.001216238No hitNo description
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974249277IPR007087Zinc finger, C2H2
SMARTSM003557.1249272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGTPEFSNLG KHCSVEDCRQ IDFLPFTCDC CYKVYCLDHR SYIRHQCPTA NKNNVTVVIC  60
PLCAKGVRLN PVEDPNITWE SHVNTECDPS NYEKATKKKK CPVPRCKELL TFSNTIKCRD  120
CTVDHCLKHR FGPDHSCPGP KKPESTFQFM NFLNGSKEES KKAQPTTTSR WTTSLLKVVT  180
SVKEKFNSEF NQPQQTGQSS RATNHSVTNN SSQVEPCPQC HLRFSTVRAL IDHVQKVHEK  240
NGVMNMTIDV CPRCSKGFRD PVALVEHVER EHKGSSM*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350207.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ8VZ421e-119SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1CLM50.0M1CLM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]