PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 218aa MW: 24995.9 Da PI: 5.1962 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 28.4 | 3.6e-09 | 23 | 47 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+rl+Wt+eLH+ F +av+qLGG+e PGSC0003DMP400039985 23 KERLKWTQELHDLFEKAVSQLGGPE 47 68*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-7 | 21 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 6.3E-17 | 70 | 114 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MPGKFREQPS SSMASNRSDC SSKERLKWTQ ELHDLFEKAV SQLGGPEIGK FERRSISEIL 60 PNFSVTAGAQ LNEALQMHMD AHKRLSDHLE VQRNLKIKLE AQGRFLERIM EEQKVCASGS 120 RPSCKSYSYS PLSLPSLCEE SESNVKELEV EYDSEFDISD CQLPRKRIRF EEDDGLLNHR 180 YNSTNNVTYS PQELEWTTLA NHQSSPYDLH ALYDYLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039985 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-159 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019071061.2 | 1e-138 | myb family transcription factor PHL7-like | ||||
TrEMBL | M1C477 | 1e-160 | M1C477_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400059400 | 1e-161 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-19 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039985 |
Publications ? help Back to Top | |||
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