PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038140 | ||||||||
Common Name | LOC102582606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 48896.1 Da PI: 7.143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.7e-12 | 378 | 423 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L Av+YIk+L+ PGSC0003DMP400038140 378 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 423 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 372 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-15 | 375 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.14E-11 | 376 | 427 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-14 | 377 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-9 | 378 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-12 | 378 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MDHSRVQQQP ITSGLTRYRS APSSYFSTLL TTTNPVTGGG CGYARDDFSH LQNSSASSST 60 DIEKVFARFV ASIGNSNSNS GNFHTNQQIQ ENPTSNMNVR SDFIVPKQEV TPRLVRHRSS 120 DYSIVSQQMN YQNQSQQFIS PVKKEPETDH DSASQMKYQS QSQQIEKSRE VTDKSFVFAN 180 SANLTPGSSS GGSGGGGNSN LTRYNSSPAG FFAQINIENE YGAMRGIGSY GTGTNAATET 240 SLSTPKSFKT QVGFSSGKPP ASPRLISPIS EFRDKVLEEK STGNEHKNDE NCITDFPMPS 300 WEDSHILSDD FLKAEDIEIE PYSNEDASHN QNSEGLARPP IPLSHHLSLP TSIMEKLLQD 360 SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK 420 ELEKQVKILA EMRSKCTCIN K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364245.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
TrEMBL | M1BZU0 | 0.0 | M1BZU0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056716 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 6e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038140 |
Entrez Gene | 102582606 |
Publications ? help Back to Top | |||
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