PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028358 | ||||||||
Common Name | LOC102597110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 47084.2 Da PI: 8.5951 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.5e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p PGSC0003DMP400028358 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f++tGtCk+G++CkF+H++ PGSC0003DMP400028358 94 QPECQYFLKTGTCKFGATCKFHHPK 118 799********************96 PP | |||||||
3 | zf-CCCH | 38.9 | 1.5e-12 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ PGSC0003DMP400028358 140 ESECAYYMRTGQCKFGSTCKFHHPQ 164 679********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 3.8e-12 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ PGSC0003DMP400028358 293 PGQAECQFYMKTGDCKFGAVCRFHHPR 319 5789*********************96 PP | |||||||
5 | zf-CCCH | 39.2 | 1.2e-12 | 340 | 365 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ PGSC0003DMP400028358 340 GEPLCIFYSRYGICKFGPSCKFDHPM 365 689*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.2E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-5 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-5 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-6 | 295 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-7 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 341 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 343 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRDSIES GHYPVREGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RIGQPECQYF LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VLGYPLRPNE SECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQGPSG YTPLIVPQGV VSVPGFAYSG QMGSVSSPEG 240 QGQTAGNNQV YGTSRSSDPA TMGSQGVTSP YRQASGPMGY YALQGENVFP ERPGQAECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPPPDCLL SPIGLPLRTG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SIAASSTTDA PTVQRLLGSS SGTSALNMTS EGLVEAVSTK PRRLSLSETR 420 KMPSGDNNID REG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014160 | 0.0 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353234.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | M1BC39 | 0.0 | M1BC39_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041844 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-179 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028358 |
Entrez Gene | 102597110 |
Publications ? help Back to Top | |||
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