PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022480 | ||||||||
Common Name | LOC102583497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 25280.5 Da PI: 5.5114 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.4e-20 | 59 | 111 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PGSC0003DMP400022480 59 KRKLSEEQVNFLEQSFEDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 111 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.1 | 5.5e-39 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kr+ls+eqv++LE+sFe e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L+e+ PGSC0003DMP400022480 58 RKRKLSEEQVNFLEQSFEDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKLKEQ 146 8**************************************************************************************** PP HD-ZIP_I/II 91 lke 93 l+e PGSC0003DMP400022480 147 LNE 149 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.216 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-20 | 56 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.78E-17 | 58 | 114 | No hit | No description |
Pfam | PF00046 | 2.2E-17 | 59 | 111 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-18 | 59 | 122 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-21 | 60 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-6 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-6 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MNNHQIIEDD NMILISQYYP DIYTQLVPQQ GESKPRRRRR KKNKLGEGSG SDQMMMMRKR 60 KLSEEQVNFL EQSFEDEHKL ESERKDKLAA ELGLDPRQVA VWFQNRRARW KSKKLEEEYS 120 KLKSEHDNNV VEKCRLETEV LKLKEQLNES EKEIKRLLLE RCDGVSSNYT SPSASSFSME 180 APFLGEFGME ALDNVFYAQE NNYVQGLDWV NLYI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | RRRRRKK |
2 | 39 | 60 | RKKNKLGEGSGSDQMMMMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022480 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226001 | 1e-143 | AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence. | |||
GenBank | HG975514 | 1e-143 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363140.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 4e-76 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | M1AYI1 | 1e-156 | M1AYI1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033036 | 1e-157 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 3e-63 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022480 |
Entrez Gene | 102583497 |
Publications ? help Back to Top | |||
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