PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022424
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 401aa    MW: 43800.5 Da    PI: 6.5865
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022424genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1781.1e-24238300163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L+ eN++Lk+el++l++e++kl+se+
  PGSC0003DMP400022424 238 ERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSEN 300
                           89***********************************************************98 PP
2bZIP_1361.5e-113043422563
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kae+eeL+++v++L+ eN++Lk+el++l++e++kl+se+
  PGSC0003DMP400022424 304 KAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSEN 342
                           79***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-25477IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.0E-21232297No hitNo description
SMARTSM003381.4E-23238302IPR004827Basic-leucine zipper domain
PfamPF001703.3E-22238300IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553240303IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-11241297No hitNo description
CDDcd147024.01E-23243293No hitNo description
PROSITE patternPS000360245260IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.5E-9304339No hitNo description
SMARTSM003380.11304344IPR004827Basic-leucine zipper domain
PfamPF001708.0E-9304342IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MFDQETPTAP SYPDWSSSMQ AYYSAGATPP FFASPVASPA PHPYMWGGQH PLMPPYGTPV  60
PYPALYPPAG VYAHPNIATP APNIALANPE SNGKGPEGKD RNSSKKLKVC SGGKAGDNGK  120
VTSGSGNDGA TQSDESRSEG TSDTNDENDN NEFAANKKGS FDQMLADGAS AQNNPAKENH  180
PTSIHGNPVT VPATNLNIGM DVWNASAAGP GAIKLQPNAT GPVIGHEGRM NDQWIQEERE  240
LKRQKRKQSN RESARRSRLR KQAECEELQR RVEALSHENH SLKDELQRLS EECEKLTSEN  300
NSIKAECEEL QRRVEALSHE NHSLKDELQR LSEECEKLTS ENNSIKVLYT FISIPLNFTL  360
RGGPMVWAWD FHVGGLKFET PCQRKQGVCL LGRARRTGLA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260RRSRLRK
2254261RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX749420.0X74942.1 L.esculentum GBF4 mRNA for G-box binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363142.10.0PREDICTED: G-box-binding factor 1-like isoform X2
SwissprotP427743e-97GBF1_ARATH; G-box-binding factor 1
TrEMBLM1AYD60.0M1AYD6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000329600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.26e-79G-box binding factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]