PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013327
Common NameLOC102603725
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 195aa    MW: 22564.2 Da    PI: 6.0826
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013327genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.76.2e-1480138563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           ++ rr+++NRe+ArrsR RK+ +++eL   v  L +eN+ L+++l++ ++  +k+ +e+
  PGSC0003DMP400013327  80 RKKRRMISNRESARRSRMRKQRQLDELWSQVLRLRTENHNLIDKLNHVSECHDKVLQEN 138
                           6889*********************************************9999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-1576140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.66878141IPR004827Basic-leucine zipper domain
PfamPF001709.8E-1280138IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-1280153No hitNo description
SuperFamilySSF579591.03E-1180129No hitNo description
CDDcd147028.24E-2081132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MIPSETAATH YFSSENPSLL PLDFNFMQNS SPSLHFSRYL TNILPNYPVN DFNNLLPSCI  60
SSNSTSDETD EQQFKIIDER KKRRMISNRE SARRSRMRKQ RQLDELWSQV LRLRTENHNL  120
IDKLNHVSEC HDKVLQENSQ LKEETSDLRQ MLTDLQFNSP FPDLCDLEDV PCTTAHLKAE  180
SSNLSITHST NLLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348623.11e-140PREDICTED: basic leucine zipper 43
SwissprotQ9FMC21e-38BZP43_ARATH; Basic leucine zipper 43
TrEMBLM1AC521e-138M1AC52_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000194651e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-47basic leucine-zipper 42
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]