PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012442
Common NameLOC102593335
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 480aa    MW: 53448.1 Da    PI: 6.953
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012442genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001886103219
                           EETTTTEEESSHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                           +C++Cgk Fs++ ++  H
  PGSC0003DMP400012442  86 VCENCGKEFSSWKSFLEH 103
                           6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.61638IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-51638No hitNo description
SMARTSM003556.11638IPR015880Zinc finger, C2H2-like
PfamPF139120.00491638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-580104No hitNo description
SMARTSM0035518085105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.6E-7225248No hitNo description
SMARTSM003550.13226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076226253IPR007087Zinc finger, C2H2
PfamPF139121.4E-9226250IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-7289316No hitNo description
PROSITE profilePS501579.328294316IPR007087Zinc finger, C2H2
SMARTSM003550.52294316IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-13294317IPR007087Zinc finger, C2H2
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MACIDQEQQQ QPIFKHYCRV CKKGFVCGRA LGGHMRAHGI GDEGANIDDD DPASDWEDKF  60
GGGVKGGNKR LYQLRTNPNR QKSNRVCENC GKEFSSWKSF LEHGKCSSED AESLVSSPCS  120
EGEDYINNGG RKGYGWSKRK RSLRTKIGTI NSTSTYPSSE DEDLVLAKCL IDLANAKVDM  180
SLAEPEESCA SASKEEERVR NPMNYLTPLV RPFDNKAKGV SNKGLFECKA CKKVFNSHQA  240
LGGHRASHKK VKGCYAAKQD QLDDSLIDDN DMNITQDDQF TLQGSKSMRK SKIHECSICH  300
RVFSTGQALG GHKRCHWITS NSPDSTSKFN FNGHIDQINL RSNLRKSSDT LDLNIPISHD  360
DMSRIRRDPM NPLSFEVSTE IHLHPWSSNP NEAKEHSCSE NYYLDETINN NNNNNNNNNN  420
NGNNNIINGT IQNVEDDEAD SKLKLAKLSE LKDMNKNSEN PSHWLQVGIG PTTQVGADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012442
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345608.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM1AA060.0M1AA06_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-27C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]