PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000240 | ||||||||
Common Name | LOC102586532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21424.8 Da PI: 10.2816 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.1 | 2.8e-12 | 83 | 177 | 12 | 94 |
HTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 12 ksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++r+ +p + +++ +++ +++ ++++d++g+s ++k++ +k+ +r v+ +GW++ v+ n+L+ g + + + ++ PGSC0003DMP400000240 83 NLSRFLIPAEWCAKLllhmtqsesqkiQSEDDRGINVSVMDPKGNSHDMKFTEWKSLKRLVFNRGWNKLVENNQLQKGNLLHLWHFRTP 171 56899999999999999999888877755555999*******************************************99988776666 PP EE..EE CS B3 89 efelvv 94 + ++++ PGSC0003DMP400000240 172 DNKPCF 177 666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.206 | 72 | 184 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.83E-16 | 72 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-13 | 73 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.31E-12 | 73 | 183 | No hit | No description |
Pfam | PF02362 | 1.8E-9 | 82 | 173 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTTIRLFGND IKVIRLFGIQ ISPCPALKNN NMQLQLQLQR DDRFMNMPDS PPPSLRLAIQ 60 SVQGSRSLYM GWKYLENSDI NINLSRFLIP AEWCAKLLLH MTQSESQKIQ SEDDRGINVS 120 VMDPKGNSHD MKFTEWKSLK RLVFNRGWNK LVENNQLQKG NLLHLWHFRT PDNKPCFAVN 180 IIRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000240 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339802.1 | 1e-135 | PREDICTED: B3 domain-containing protein At2g31720-like | ||||
TrEMBL | M0ZGI2 | 1e-133 | M0ZGI2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000316 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 6e-09 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000240 |
Entrez Gene | 102586532 |
Publications ? help Back to Top | |||
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