PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20063.4 Da PI: 10.1437 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.2 | 3.3e-16 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n+ r t+ kRr+g++KK +ELS+LCd++++ ii++++ PEQU_40935 11 ISNDATRRATLKKRRKGLIKKVNELSILCDVRACSIIYAPN 51 99************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.213 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.67E-30 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 5.7E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-23 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-15 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MARKKVKLAW ISNDATRRAT LKKRRKGLIK KVNELSILCD VRACSIIYAP NEPQPEAWPS 60 PQEATRMLSR FRAMPEMERC KKMMNQDSFL RQRVSKLHDQ LCRQDRVIRE LESAALLREC 120 VAGASIDNLR IEELAALAWI LEDKTKGIQD RIDHLRFTAA FEGTISGDAK QVAVE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAWISNDATRRATLKKRR |
2 | 21 | 25 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594644.1 | 1e-126 | agamous-like MADS-box protein AGL80, partial | ||||
Refseq | XP_020598418.1 | 1e-126 | agamous-like MADS-box protein AGL80, partial | ||||
TrEMBL | A0A1L1WL10 | 4e-74 | A0A1L1WL10_9ASPA; MADS25 | ||||
STRING | GSMUA_Achr3P08500_001 | 1e-67 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-38 | AGAMOUS-like 80 |