PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40925 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C3H | ||||||||
Protein Properties | Length: 192aa MW: 22520.5 Da PI: 8.7927 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 6e-08 | 75 | 94 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+ G+Ck Gd C +aHg PEQU_40925 75 CPDFRM-GYCKKGDACEYAHG 94 999999.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.6E-5 | 69 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-5 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-6 | 75 | 95 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-6 | 75 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 36 | 104 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MELRYLPSNS DSKAVDLANP HLDPYSCDSF RIYQFKVKLC TRGRSHDWTE CPFAHPGEKA 60 RRRDPRKFQY SGISCPDFRM GYCKKGDACE YAHGVFESWL HPSKYRTQSC KDGRACRRRV 120 CFFAHTPEQL RLPPNQESSS KSWINEMASS SQRVRLEKTE EPEMRRIERK TEVVMNDGRE 180 SPDFGWVLDL LK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020599180.1 | 1e-142 | zinc finger CCCH domain-containing protein 23-like | ||||
Swissprot | Q9FU27 | 4e-66 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2I0XCM4 | 3e-90 | A0A2I0XCM4_9ASPA; Zinc finger CCCH domain-containing protein 20 | ||||
STRING | PGSC0003DMT400065463 | 3e-67 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 8e-68 | C3H family protein |
Publications ? help Back to Top | |||
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