PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 220aa MW: 24182.4 Da PI: 9.1936 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.9 | 3.7e-31 | 29 | 86 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++ ++eClkNhAa+lGgha+DGC+Efmps+ ++ +++++lkCaAC CHRnFHRr +++ PEQU_40633 29 TILHRECLKNHAANLGGHALDGCCEFMPSPAATlADPTSLKCAACSCHRNFHRRVSVS 86 5678***************************999********************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-19 | 30 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.0E-26 | 30 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.081 | 32 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-26 | 32 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 108 | 174 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.36E-14 | 109 | 174 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.4E-25 | 115 | 172 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEHKPQAETQ LKLSSLPNGA VKKHRPPATI LHRECLKNHA ANLGGHALDG CCEFMPSPAA 60 TLADPTSLKC AACSCHRNFH RRVSVSSSEE EIECFTSAPH TLLALSRNER PSATRKRFRS 120 KFSAEQKGKM MELSERLGWR LQKRDEGLVE EYCRDIGVEK GVFKVWMHNN KYQLLRVLRR 180 GEGRSNVAGD GGGGGGRMVE GNGMSGDVDG NVMNGSFSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 114 | 171 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594427.1 | 1e-163 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9SEZ1 | 4e-51 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A2I0WGE3 | 1e-107 | A0A2I0WGE3_9ASPA; Transcription factor HB29 | ||||
STRING | GSMUA_Achr6P02700_001 | 2e-74 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-51 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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