PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25977.9 Da PI: 11.5509 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1e-16 | 185 | 222 | 2 | 43 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAa 43 +++GVr+++ +grW+AeIrdp ++rkr++lg+f taeeAa PEQU_39821 185 RFRGVRRRP-WGRWAAEIRDP---NRRKRVWLGTFNTAEEAA 222 79*******.**********8...335**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.00E-20 | 184 | 222 | No hit | No description |
Pfam | PF00847 | 4.6E-11 | 185 | 222 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-10 | 185 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-14 | 185 | 222 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.124 | 185 | 222 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-19 | 185 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 186 | 197 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 208 | 222 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLHAYLASFV TCIPSSIFSF FLANLQSPPK TLVAACARKP RECLQILFRF FFRFYFRVPS 60 QSFHETSNRL LGTRSEAEST DLIAISTRIH HMDFPDFPVK FSEHVLTKTR KLISTGKTRD 120 LKRKLVRIFF TDKDATDSSS SDDDSLSLTR RRVKRHVHEI GFQIGHRFRR PTPAKRLSES 180 CDLKRFRGVR RRPWGRWAAE IRDPNRRKRV WLGTFNTAEE AA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 208 | RRRPWGRWAAEIRDPNRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594495.1 | 1e-160 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | Q9SUE3 | 5e-26 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A2I0VEQ1 | 1e-73 | A0A2I0VEQ1_9ASPA; PTI6 | ||||
STRING | XP_008810850.1 | 4e-35 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15640 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-12 | cytokinin response factor 3 |
Publications ? help Back to Top | |||
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