PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_33926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 21588.3 Da PI: 8.9775 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.5e-20 | 26 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp gk++r++lg+f++aeeAa+a++ a+++l+g PEQU_33926 26 TRFRGVRKRP-WGRFAAEIRDP---GKKTRVWLGTFDSAEEAARAYDTAARALRG 76 589*******.**********8...557*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.55E-31 | 26 | 83 | No hit | No description |
Pfam | PF00847 | 5.8E-14 | 26 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 27 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.9E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.748 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 27 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MASRKGRSPA AGLPATAPPL PPGTETRFRG VRKRPWGRFA AEIRDPGKKT RVWLGTFDSA 60 EEAARAYDTA ARALRGPKAK TNFCALPSHA STPVGGSGSV ALPFFHQQLP PPSRPASSSL 120 SSTVESFSGP RISVPSAIYI RPLVRPSPPR VLDDDQDCHS DCGSSSSVVD DGDIASAYRQ 180 PLPFDLNLLP LPDDELQSTA LCL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 27 | 83 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598205.1 | 1e-143 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 4e-34 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A2I0W524 | 1e-107 | A0A2I0W524_9ASPA; Ethylene-responsive transcription factor 3 | ||||
STRING | XP_008801873.1 | 3e-58 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-22 | erf domain protein 9 |