PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_30280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 37019.4 Da PI: 8.9429 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.3 | 1.8e-05 | 232 | 270 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K a++L ++veYIk+L PEQU_30280 232 VRKEKLGDKINALQQLVSPF-----GKTATASVLHETVEYIKYL 270 67788999*********998.....8*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.553 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0066 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-9 | 231 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00104 | 231 | 274 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-8 | 235 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MAEDFQPCNV WWNNSRSSSF NGSQAINSSS DSFSWLPANK TSESKPRLCG QKTDNSFSMH 60 QEDIDSRPFY RQQLGESSAT VPLSEMNFCT SSSVSSTYVS SSSMPTVLAE RDKSFQQPFF 120 DSQEMAYHGF SNETLEPSWN KLPPVFKEFS HKQQSDINQL QFTSTIPFWN DSAGFCPSAL 180 PSSGIQLFES KPGCSMTVKS LEEVSDMKTS NESEMKKPRI ETLSPLPAAF KVRKEKLGDK 240 INALQQLVSP FGKTATASVL HETVEYIKYL HDQVNEKKKR GGVPGRSIVG ERSSLELARR 300 RKGKLAEPGG RLDAKRGNNI STSSNRNHIA RV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020685740.2 | 2e-65 | uncharacterized protein LOC110101967 | ||||
TrEMBL | A0A2I0WKN0 | 5e-62 | A0A2I0WKN0_9ASPA; Uncharacterized protein | ||||
STRING | XP_008789835.1 | 1e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G05170.1 | 3e-25 | bHLH family protein |