PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28844
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 1388aa    MW: 155226 Da    PI: 8.7847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28844genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002812791304123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                  ++C    C++sF++k++L+ H r+ +
  PEQU_28844 1279 FSCDveGCSMSFRTKHDLTLHKRNvC 1304
                  899999****************9877 PP
2zf-C2H211.10.001313031326223
                  EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                  +Cp   Cgk F ++ +L +H ++H
  PEQU_28844 1303 VCPekGCGKKFFSHKYLLQHRKVH 1326
                  69999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.4E-151960IPR003349JmjN domain
PROSITE profilePS5118314.3812061IPR003349JmjN domain
PfamPF023755.4E-142154IPR003349JmjN domain
PROSITE profilePS5118433.324177346IPR003347JmjC domain
SMARTSM005586.3E-48177346IPR003347JmjC domain
SuperFamilySSF511973.84E-25191348No hitNo description
PfamPF023737.5E-36210329IPR003347JmjC domain
SMARTSM003551112791301IPR015880Zinc finger, C2H2-like
SMARTSM003550.008113021326IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.65313021331IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-513031330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013041326IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-913181360No hitNo description
Gene3DG3DSA:3.30.160.602.5E-913311356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61413321361IPR007087Zinc finger, C2H2
SMARTSM003550.001413321356IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013341356IPR007087Zinc finger, C2H2
SuperFamilySSF576675.75E-813501384No hitNo description
Gene3DG3DSA:3.30.160.605.8E-913571385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.313621388IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.18213621388IPR007087Zinc finger, C2H2
PROSITE patternPS00028013641388IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1388 aa     Download sequence    Send to blast
MALDPVFSEV LPWLKTLPLA PEYHPTLVEF QDPIAYILKI EQEASRYGIC KIVPPVPAVP  60
KAIAVTNLNL SFSARSPSGD PTFTTRQQQI GFCPRRPRPV QKSVWQEAKA RSFERAHLRK  120
CRKKNKSSSS LSPIEVESLF WKTAADKPSS VEYANDIPGS GFSKLREEEI DMTAAENVGE  180
TAWNMRGVAR AKGSLLRFMK EEIPGVTSPM VYVAMLFSWF AWHVEDHDLH SLNFLHMGAG  240
KTWYGVPRDA ALAFEEVVRV HGYGGEVNPL ITFATLAEKT TLMSPEVLIG SGIPCCRLVQ  300
NAGEFVVTFP GSYHSGFSHG FNCGEASNIA TPEWLKVAKE AAIRRASTNC PPMVSHYQLL  360
YALALSLHTR NPSRILSMPK SSRLKNKLRC VGETMIKKTF VQNVIRNNSL LNILLDDGSS  420
CLILPRRTFD KPLCSGLHRK LQMKVKPRKA LDLCHGEDKM EEISISDFSI GSRRTWDSCS  480
KGFCQAEENS EYVYHRKNLS TNKISCLGSS GSHNLYSETQ NMEGQNNEHR TDGVLDQGLL  540
SCVTCGILSY SCVAVIQPSE AAAECLISCD YNSYADHITG FEENCGLNDE AAMNIHNSDV  600
DINPGQIEKI NSSVQVPFSN DGLLSNAKVE RETSALDLLA SAYGDLSDSE ETPGICSTLY  660
KFIHCSKKVA NSSLVSKLCQ LHGNDGYECS CEDKMTQLSG NQQDTIGKPT RLVDHTKMTT  720
HSFNASINSF HQTVPTKVNL NDMMTKNIKS DSSVFDQPGS SYGSKMATGN TFTTFGHLDD  780
SINNSKMTVV QPSDKDSYRM HVFCLEHAVD VEKRLRALGG VNLMLLCHPE YPKIESEAKL  840
LAEELGLHYQ WKDVKYKDAS QQDQEKIRIA IEDKDVIPCN GDWAVKLGIN LYYSVSLSQS  900
PLFRKQLPYN EVIYKSFSQK SPTELNSSGT IARRQKKIIF AGRWCGKVWM SNQVHPYLAE  960
QNLPDDDDNI YLNIVACEAN TDIDDHKQAI LPRRNSKNGN SLSRRKFDKM KKATVRSSTR  1020
KPVHTGLNSS DDLSGDDNSG NADGDQDSDR RKAHQKGKKS AVISNTLKHA HTIPDNCRNH  1080
RCAKENSQYS KNSDGDQDTD RRRSDKKRKS IAVRSNTRKP VRTQLVDSGD AGCAESIGNT  1140
DDEQDRNLSS EADTDSENKK KASLLRRNLP NNNAAAMKKS GRKRKRSKAS CIRKAAHTRP  1200
DSSAAFGYAE DDISIKCGRS LKCLRSHSKG TSGEPPSLQP CKGRFNYCEA TVVVAPEKQN  1260
NKRKIKKAHN SVVCDKENFS CDVEGCSMSF RTKHDLTLHK RNVCPEKGCG KKFFSHKYLL  1320
QHRKVHSDDR PLKCPWKGCK MTFKWAWART EHIRVHTGER PYSCREPGCE LTFRFVSDFS  1380
RHRRKTGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-74114396417Transcription factor jumonji (Jmj) family protein
6ip4_A1e-74114396417Arabidopsis JMJ13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592304.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2I0B0F40.0A0A2I0B0F4_9ASPA; Lysine-specific demethylase REF6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6