PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_27196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 186aa MW: 20878.4 Da PI: 5.8219 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.5e-31 | 26 | 83 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gC ++k+vers++d+ +++itY+geHnh+ PEQU_27196 26 DLWSWRKYGQKPIKGSPFPRGYYRCSSSkGCLARKQVERSRTDQGMFVITYTGEHNHP 83 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-31 | 11 | 85 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.029 | 19 | 85 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-27 | 22 | 85 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-38 | 24 | 84 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 26 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
LPLANRRKNQ QKRRVCQVLA DGLSGDLWSW RKYGQKPIKG SPFPRGYYRC SSSKGCLARK 60 QVERSRTDQG MFVITYTGEH NHPLPTHRNS LAGSTRQKFQ AGGTEVGGGI PPEPSTSAGE 120 GSVRLSPNTP LTAGMEEELL RPRKKKKEVR TEEEEEVEEE DEDLDMLLVE DMEVVGEDEV 180 LFTGFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-25 | 25 | 86 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-25 | 25 | 86 | 17 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 147 | RKKKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575308.1 | 1e-131 | probable WRKY transcription factor 27 | ||||
Swissprot | Q9FLX8 | 1e-51 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | A0A2I0VZB1 | 1e-90 | A0A2I0VZB1_9ASPA; WRKY transcription factor 22 | ||||
STRING | XP_008797253.1 | 5e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 8e-53 | WRKY DNA-binding protein 27 |
Publications ? help Back to Top | |||
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