PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_23731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C3H | ||||||||
Protein Properties | Length: 345aa MW: 38382.3 Da PI: 6.767 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.2 | 1.6e-09 | 120 | 141 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg PEQU_23731 120 VACPDFRK-GNCKRGDACEFAHG 141 68******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.1E-6 | 116 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.995 | 117 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 120 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 122 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.343 | 151 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 151 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MMMGDSGYRN PTVDVPPWSP FDDQFHLSAA GDYLLSEAGL AALQRYLPAN EVALEHDPDE 60 DAELTDPPID AYSCDEFRIY EFKVRRCARG RSHDWTECPY AHPGEKARRR DPRKFHYSGV 120 ACPDFRKGNC KRGDACEFAH GVFECWLHPA RYRTQPCKDG TACRRRVCFF AHTPEQLRYL 180 PHQKQQRMDS YDGSPMRLDG CFPKGLISSS PTSTLISPPL SPPVESPPVS PMGSSVNDVL 240 ASLRKLQISK VKSMPSSWGG LGASGVGFRS GFCSLPSTPT KAPAIVGRGW LDFDGFAEVE 300 EAVERVESGR ALRAKMYERL SKESGLERLD NSPAPDVGWV SELIM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580576.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | O82199 | 1e-114 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A2I0W614 | 0.0 | A0A2I0W614_9ASPA; Zinc finger CCCH domain-containing protein 2 | ||||
STRING | XP_010244375.1 | 1e-143 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-111 | C3H family protein |
Publications ? help Back to Top | |||
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