PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_18573
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 702aa    MW: 78326.6 Da    PI: 9.7892
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_18573genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.3e-065475325
                S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                t++Cr fa+ G+C+ G  C+F H
  PEQU_18573 54 TPPCRAFAA-GQCRWGTECRFLH 75
                89*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5545178IPR000571Zinc finger, CCCH-type
SMARTSM003560.00225177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-65482IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427146173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0039147172IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4207233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173207234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6210232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4212233IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
RSRSRSRGRG XXXXFRSRSL PYDSRSRSWS KSPSYISKQG SDRWTDKGRM RRMTPPCRAF  60
AAGQCRWGTE CRFLHEAGDW RQIDRHHDAG SNDGRGSRLE RESRPPHGEN LTDPREKDNY  120
THEKPFRRHE ENLGDGLGNN VPYQGYRSNE RCYDFTIGRC NRGAACRYIH HDASSDSGRS  180
SRDELRGRVH DRRDGNVSFG HRIEHRRSSD VPCKYFLRGY CLHGDGCKFR HQVGPLNSPV  240
EGSFDGSHHN FVSGDKQNFT NRPQSQPVPT QDFHKETQSS EQKTRSKVSE ELSANNPLPT  300
ISIAGQNTDI SGQIQFAPQL SHAQNFASNS SFQQFAPSPL KGQIQQVMPS HSQNGNNQLG  360
ALHKPPDDQS FNAGMQNLSA NPPSYQLNPQ NLESRAQAQQ NLPMISHSVS NINLNKPIQQ  420
NGQLTHNPHN QPDLSVGGHI QQNLSSHIGH SDSQQILQAS LNPQIFNSNE KISEIPTKND  480
PIQIGQAADS IEVKPSTFSS DNSIAHKVVT SEQAAKITDL SASLAQFFGT AVHNSQPSSS  540
MTPPSFLNPS SMSSFMTAVA PPPTEAEGSQ TNPSQSTSKP DQQKHVIENF KQVNDSSSKE  600
AKKIDKGQQS QLQNGDAEGR KDKIKEVKEM RMFKCALVEF VKDILKPKWK EGQLSKEAHK  660
SIVKKVVDKV CGSMQGSNVP QTQEKIDLYL LNSKAKLSKL VQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593978.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_020593979.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_020593980.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_020593981.10.0zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A2I0WR820.0A0A2I0WR82_9ASPA; Zinc finger CCCH domain-containing protein 55
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein